Protein Info for GFF514 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 250 to 273 (24 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 349 to 368 (20 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 8 to 329 (322 residues), 109.2 bits, see alignment E=2.3e-35 PF19040: SGNH" amino acids 413 to 657 (245 residues), 143.4 bits, see alignment E=1e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (683 amino acids)

>GFF514 hypothetical protein (Xanthobacter sp. DMC5)
MSLAYRPDIDGLRAVAVGSVVLFHARIPPFTGGFIGVDVFFVISGFLITSILHQELTAGT
YSLVDFYDRRIRRIFPALFLMMAATTLFAALILMPRQMQGYAGTLVPSALFFANIHFESL
LNYFGPTADEVPLLHLWSLAVEEQFYIFFPLVLFVLMKLGGRRLAVGVLALIAVGSYAYA
QSIVDSEQSAAFFLLQSRAWELLAGSLLAMVTLPRLPEKAASWLGIAGVIAIVIPVFAYG
KETVFPAVGALPPVLGAVAIIVSGGFAPNGIVARLLSLKGMAYVGRISYALYLSHWPMLV
LIAIWKGRHTTYIESGIVILVAGVIAALSLKYVETPLRRGTALGGRRLLRIGAGACAILL
TVGVALVLQKVGRGVFPISPLGAAAEAAADDHSPSQRNCANNARFWTVDQMKPIAECAVG
PDAAKGTYDVLVWGDSHAGATFLGLAEIVEKLGLTARLQTMAACPALIGGIARQQHNNGS
VCARYVAAVMDEVRRVRPKVVVLVGRWSLWTTLSGPLFVLVSDEVPGGKAATRESSERVF
VHMMERTVSELRALGTQVIVLGQAPELRPPAGKCVAVREFNGTGNIESCLSQPRAKALQV
IGPASEVIAATASRHPGVSVFPMADVFCRDDRCFAAEGMRFFYVDGDHLSATGARLTGEN
KVLRRTLIQALEASGVRISTAND