Protein Info for GFF5136 in Variovorax sp. SCN45

Annotation: Putative DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1548 PF13604: AAA_30" amino acids 394 to 456 (63 residues), 28.5 bits, see alignment (E = 3e-10) PF13086: AAA_11" amino acids 394 to 458 (65 residues), 29 bits, see alignment (E = 2.3e-10) PF13087: AAA_12" amino acids 1174 to 1344 (171 residues), 41.9 bits, see alignment E=2.1e-14 PF18741: MTES_1575" amino acids 1389 to 1482 (94 residues), 108.9 bits, see alignment 2.6e-35

Best Hits

KEGG orthology group: None (inferred from 61% identity to xal:XALc_1795)

Predicted SEED Role

"DNA helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1548 amino acids)

>GFF5136 Putative DNA helicase (Variovorax sp. SCN45)
MSAADLMKKLLDYVLEQAKTVDPKAFKLAGHAGFLKGYADLQGLPGVDFDVQEDGDHIWL
KTARLEAHPPPALPPLALLGASKATQPPIIVSAAPHGTRPNIDEAAFQRLVALLPPAQPE
KLAEREEFIDINRSKLVSALNQYVPLWEAWAEGEKPRRRTISLYGDLFALKHQLEAEETA
KPQELVWGLGVSAWKLSYAARLQTSIIDFQYPLITQAMEIGMDDRTLALEVRPRSVGPQF
SFDAFAACQLMSAPEVEKAAREALVKGADRPVSPFDPGSFEHLLKLIAGNLHDKGRYEQN
FEGFPKANDELVVTDAWVLLSRPKSVNFLQEDIERLKTRLTPDVSIPLGPLALVTPPSDD
PSTHASSAFRGLSGTSGGHGATGKVQELFFPLPYNHEQVTIVEQLERAAGVTVQGPPGTG
KTHTIANIVCHYLATGRKVLVTSKGEQALEVLQSKIPEMIRPLTVALLSGDREGMRQFQG
SIEAIIHNVSQLNLEVVRDQIRNEHSGIDRAHSELATIDRRVDTIAMAQLSDIEVDGIGM
RAQKMAELVISGEEKHAWFDDVLSLDPAHAPPIDAGVAAQTREARRRLGKDLGYALSRIP
ASVNMLAAEQVSQLHDALVSLRQIEAAEADGGLLALRAMTPDVLEDARKLLSKVESARQL
AHELEETGEMWTRELRKKCGQATFASERAAFEALFGDIDKLVAARAELLKTPIDVPELAL
ASAKVREAVQRAAETGKPFGLMSFGGGDVKELVAGIRVSGLVPSSVEHWKHVQRYLVLHE
QILSFGVRWNQVADLLSLPSLQGGVVALRQVELVTTMARKVHTLATVYDGHTPGLGERVF
AKPPTAQLLGTSSQLGEVQQHLRSHLTRVELARAATTLVILQEKLAGTTGAVADALREFV
DKDLGNVAMPGERATARYAELVGEIRRVEALVHDLALVNDVSDRLEQAGAAKLSVRVRSQ
LVDASGEDLALPVGWREAWTWSRVRAHLDAIESREELRTLAARRRDLEAGLARLYESVVS
KSAWLSTKLSASPKVLAALGKYSTAMRRIGQGTGPNATRYRRDAQAAMMEAQGAIPCWVM
SHSKVSETLPAHLGAFDLVIVDEASQSDLWALPAVLRGKKILVVGDDKQVSPDGGFISSV
RIQELRDRFLSEQPYAAVLTPEMSLYDIASAVFASNKVMLREHFRCVPPIIGYSNTFYDH
QIQPLRIPKASERIDPPLVDIFVPGGTRGAKAENMMEAECIVEEIAAIVANPQLVGRTIG
VVSMLGLEQAKRIDSMVRQRMDAKELMRRKFDVGDARLFQGSERDIMFLSMVVGQEGAKA
VSGNAFEQRFNVAASRARDRMYLVRSVQMADLSHLDLRRGLLEHFSKPDAGPQMEGDAKS
LIDLCESGFEKQVYSELYSRGYRVVPQVKAGAFRIDMVVESADDARLAIECDGDEYHGPD
RWQADMGRQRVLERAGWTFWRCFASAWSLQREAIVEELLARLSAMGIEPLGKLERVPSLV
EYREWRPAEFAKTAEGASADALEDAIAAALTTPDMNTGAVADSISLKA