Protein Info for PS417_02605 in Pseudomonas simiae WCS417

Annotation: IMP dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1096 PF08379: Bact_transglu_N" amino acids 6 to 84 (79 residues), 91.8 bits, see alignment 5.7e-30 PF01841: Transglut_core" amino acids 140 to 246 (107 residues), 57.3 bits, see alignment E=2.8e-19 PF09899: DUF2126" amino acids 276 to 1089 (814 residues), 1354.3 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 61% identity to azc:AZC_3304)

Predicted SEED Role

"Large protein containing transglutaminase-like domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TUI6 at UniProt or InterPro

Protein Sequence (1096 amino acids)

>PS417_02605 IMP dehydrogenase (Pseudomonas simiae WCS417)
MSIHVALHHVTHYRYDRAVELGPQIVRLRPAAHSRTRILSYALKVLPEQHFINWQQDPQG
NYLARLVFPEKTDELRIEVDLVAEMAVFNPFDFFLEPYAENIPFSYAADEQRELAPYLET
LPLTPRFAAYLAGIDRTPLPAVDFLVGLNQRLAADIGYLIRMEPGVQTPEFTLENASGSC
RDSAWLLVQLLRNLGLAARFVSGYLIQLTADVKALDGPSGTEVDFTDLHAWCEVYLPGAG
WIGLDATSGLFAGEGHIPLACSPDPSSAAPISGLVEPCECEFTHEMSVERIWEAPRVTKP
YTEEQWLAIQALGRQIDGDLLKNDVRLTMGGEPTFVSIDDPDGAEWNTAALGPDKRRLSA
ELFQRMRKHYAPKGLVHFGQGKWYPGEQLPRWSLNCYWRRDGVPIWHNSALIADEQEDYG
ADGALAGRFLASVAERLKLPARFVFPAFEDNFYYLWREGALPQNVNAQDPRLSDDLERER
LRKVFNQGLDKVIGQVLPLARTAANDRWQSGRWYLRDNHCRLVPGDSPLGYRLPLASQPW
VTAAEYPFVHPTDPNQDQPELPSSAQLQRHGEPAPSDERVPKVDESADWLTRTALCAEAR
EGRLYLFMPPLERVEDYLELVAAIEASAEELHCPVLLEGYEPPADTRLSNFRITPDPGVI
EVNVQPSATWDELVERTEFLYEEARQTRLTTEKFMIDGRHTGTGGGNHFVLGGATPKDSP
FLRRPDLLRSLISYWHNHPSLSYLFSGLFIGPTSQAPRVDEARNDALYELEIAFAQMPSP
GEECPPWLVDRLLRNLLIDVTGNTHRAEFCIDKLYSPDGATGRLGLLELRAFEMPPHARM
SLTQQLLLRALVARFWREPYAPPKLARWGTELHDRFLLPHFIEQDFADVIVELNAAGYPL
RAEWFAAHLAFRFPKVGDYAVNGIELELRQALEPWHVLGEEGAVGGTVRYVDSSLERLQV
KLTGLPPQRYLLTCNGIPVPLQATGRVGEFVAGVRYRAWQPANCLQPTIAVHAPLVFDLL
DTWMQRSLGGCQYHVAHPGGRNYDSLPVNANEAESRRMARFFRLGHTPGKLPVPTVVVND
ELPMTLDLRRFPNNND