Protein Info for PS417_02600 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 transmembrane" amino acids 13 to 38 (26 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 54% identity to pba:PSEBR_a557)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UF55 at UniProt or InterPro

Protein Sequence (149 amino acids)

>PS417_02600 hypothetical protein (Pseudomonas simiae WCS417)
MNGFPEMGSFLARYFPVFMGTIFMAIFSGSAAVSMAGVTYLRGLDPALKANYSIGAILVL
VAVLVFGNVMIARGYPWATRLVAAYLGVCLLFVLPMMQYDLNMLVYGSAVLFPLLGLLLL
NSKRHREMRKKLFEIRHLRQAAIARRKTR