Protein Info for GFF51 in Methylophilus sp. DMC18

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR02276: 40-residue YVTN family beta-propeller repeat" amino acids 36 to 70 (35 residues), 33 bits, see alignment 2.3e-12 amino acids 157 to 194 (38 residues), 49 bits, see alignment 2.3e-17 amino acids 198 to 237 (40 residues), 49.7 bits, see alignment 1.4e-17 amino acids 240 to 281 (42 residues), 37.8 bits, see alignment 7e-14 PF01436: NHL" amino acids 107 to 131 (25 residues), 22.7 bits, see alignment (E = 2.7e-08) PF10282: Lactonase" amino acids 148 to 219 (72 residues), 30.7 bits, see alignment E=7.1e-11

Best Hits

KEGG orthology group: None (inferred from 51% identity to mei:Msip34_0604)

Predicted SEED Role

"FIG00800105: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>GFF51 hypothetical protein (Methylophilus sp. DMC18)
MRTIDVSACWRLRLKALSVTLSLCFTLGASAAEFAYITNQGEHTVSVVDLRQLQVIKTIV
VGQSPVGVAIHPQQKKVYVSNVDGRSISVIDITRQQVVQTLALPIAPVGLAVNQAGNRLY
VADWYHHSLLVVEPVHGQVLASIEVGQAPGGLQLSRDGQTLYVANRDSNDVSVVDTRANK
ELRRIKVGEHPFGFGLSPDGKQLYVVNVYSNSVSVIDTHDQRVVATLSVGRHPYCVTTDP
QGQRLFVTNTGEDSVSVIDLASQRPLAKIRVPGTPEGIAFDRQQQQLVVTSWMDNVVAII
DGQRLDSPRQVKVGAQPRAFGGFVFEADE