Protein Info for GFF509 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 45 to 84 (40 residues), see Phobius details amino acids 86 to 89 (4 residues), see Phobius details amino acids 93 to 116 (24 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 324 to 324 (1 residues), see Phobius details PF02653: BPD_transp_2" amino acids 46 to 315 (270 residues), 142.5 bits, see alignment E=7.2e-46

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 80% identity to rfr:Rfer_3500)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>GFF509 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRFLFKTDYNQDIRLAKHGGHTFWYSLLGLFLVVAPWALPEYWLAQLTFVLIYAVVGLGL
MLLAGFTGLFSLGHAAFLGVGAYTQAIMVNAGIPFPLALACAGLLSAAVGMVVGLPALRV
KGIYLGMATLAFGFIVEEVIARWEHVTGGNAGLMVQYPTLFGWALDSTDEFYFLCLVVTV
LATLGIVNLMRSSTGRAFVAIRDSEISAQSMGIQLARYKTLSFALSAALAGIGGALYAHK
IQFLSPEQFSIIQSIDLLLMVVIGGLGSIHGAFLGAIFLIVMPQLISLGKDFLPEAIGQA
AGLQGAVYGIVLIAFVLFEPMGLYGRWLKVRTWFQLFPFYRKGLFKRQKTFQKSDRLK