Protein Info for GFF5071 in Variovorax sp. SCN45

Annotation: AmpG permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 63 to 80 (18 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 209 to 228 (20 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 306 to 324 (19 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 357 to 382 (26 residues), see Phobius details amino acids 394 to 413 (20 residues), see Phobius details amino acids 422 to 445 (24 residues), see Phobius details PF13000: Acatn" amino acids 32 to 151 (120 residues), 24 bits, see alignment E=1.4e-09

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 92% identity to vpe:Varpa_0269)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>GFF5071 AmpG permease (Variovorax sp. SCN45)
MSASPVETPTTPSPPWRDALKVYLEPATLRMLALGFSAGLPLLLVLGTLSFRLREAGIDR
TTIGYLSWVGLAYGFKWVWAPLVDRLPLPPLTTLLGRRRGWLLLAQGLVITGLVGMAMND
PRLGLTPLIWCALLVAFGSATQDIALDAFRIESAEPRKQAAMAAAYQTGYRLAMIWAGAG
VLWVATWAEVAPAVAATGAAAYQNGAWKTAYLVMAASMTVGVLTVLLSPEPLPRALPKAR
NAAEWLRSALIEPFADFIHRYKWQAVLILSLIAIYRISDVVMGIMANPFYVDMGFTKDEV
ATVSKIYGVVMTLVGAFVGGVLSMRLGVMRVLMMGAVLSAASNLLYAWLATRGHDTTALI
AVVSADNLAGGIASAAFIAYLSSLTNISYSATQYALFSSLMLLLPKFIAGYSGAFVDAYG
YSNFFVATALLGVPVLVLVALASRLTAITSPAERQ