Protein Info for GFF5049 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Chaperone protein hscC (Hsc62)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 PF00012: HSP70" amino acids 9 to 485 (477 residues), 387.8 bits, see alignment E=7.9e-120 PF06723: MreB_Mbl" amino acids 38 to 268 (231 residues), 36.7 bits, see alignment E=2.3e-13

Best Hits

KEGG orthology group: K04045, molecular chaperone HscC (inferred from 66% identity to dac:Daci_3774)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>GFF5049 Chaperone protein hscC (Hsc62) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MGSNKTLQLGDRKFRPEELSALVLKSLKADAEAALGEPVTEAIVTVPAYFSDAQRKATRA
AGELAGLRVDRLVNEPTAAAMACGIHQLGAETRFLVFDLGGGTFDVSILEIFEGVMEVRA
SAGDNFLGGEDFNDVLVDLFFQHSELSPNLKRNHGFMQRLAAQAEIAKRELGAKPSARMA
VHEAGTLHEFEVTEEAFTSACAPLLKRLRVPVERALRDANLRTTELDNIVLAGGTTRMPI
VRRLVTSLFGRFPAIDFNPDEIVALGAAVQAGLKAKDAALEEVVMTDVAPYSLGVEVSKR
LSATATSNGHFDPIIERNSPVPISRVKTYFPINAGQSLVELSIFQGEARMVNDNIHLGNL
SIALPPLPVDECAVDVRFTYDVNGLLQVEAVVQKTAAKFSLVIEGNPGVLTPEEIAQRLK
ALAEIKIHPREALDNRTTLARAERIYQQLRGEVREWLAQQMLSFDAALATQDNRKITPIR
QRLEQALDAIENDGTLHNDPSLEPR