Protein Info for PS417_25730 in Pseudomonas simiae WCS417

Annotation: phosphoglycolate phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 PF00702: Hydrolase" amino acids 14 to 194 (181 residues), 112.7 bits, see alignment E=6.2e-36 PF13419: HAD_2" amino acids 16 to 199 (184 residues), 126 bits, see alignment E=3.8e-40 PF12710: HAD" amino acids 16 to 191 (176 residues), 57.7 bits, see alignment E=4.6e-19 TIGR01449: phosphoglycolate phosphatase, bacterial" amino acids 16 to 222 (207 residues), 215 bits, see alignment E=1.8e-67 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 88 to 199 (112 residues), 38.8 bits, see alignment E=2.1e-13 TIGR01549: HAD hydrolase, family IA, variant 1" amino acids 114 to 194 (81 residues), 33.2 bits, see alignment E=1.3e-11 PF13242: Hydrolase_like" amino acids 157 to 223 (67 residues), 39.7 bits, see alignment E=7.4e-14

Best Hits

Swiss-Prot: 88% identical to GPH_PSEF5: Phosphoglycolate phosphatase (PFL_5630) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K01091, phosphoglycolate phosphatase [EC: 3.1.3.18] (inferred from 98% identity to pfs:PFLU5562)

Predicted SEED Role

"Phosphoglycolate phosphatase (EC 3.1.3.18)" in subsystem 2-phosphoglycolate salvage or Glycolate, glyoxylate interconversions or Photorespiration (oxidative C2 cycle) (EC 3.1.3.18)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.18

Use Curated BLAST to search for 3.1.3.18

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UD45 at UniProt or InterPro

Protein Sequence (272 amino acids)

>PS417_25730 phosphoglycolate phosphatase (Pseudomonas simiae WCS417)
MSGFEQLFPGKLPRLVMFDLDGTLIDSVPDLAAAVDEMLLKLGRKPAGIDSVREWVGNGV
QMLVRRALANNIDAEGVDEVEAEHALELFNAAYEDGHELTVVYPGVRDTLKWLSKQGVEM
ALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALFFVMKMANIPASQSLFV
GDSRSDVQAAKAAGVQCVALSYGYNHGRPIAEESPSLVIDDLRLLIPGCLGAGAEITLPD
TDPSPSGNSIVVVTRKLWMKVIKALARWRWRA