Protein Info for GFF5022 in Variovorax sp. SCN45

Annotation: FIG011065: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 18 to 45 (28 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 135 to 164 (30 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details PF01925: TauE" amino acids 8 to 244 (237 residues), 165.4 bits, see alignment E=9.2e-53

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 96% identity to vap:Vapar_0315)

Predicted SEED Role

"FIG011065: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>GFF5022 FIG011065: hypothetical protein (Variovorax sp. SCN45)
MEMLVVTGASLLAGFVDSIVGGGGLILVPALFAVFPGAPPATLLGTNKSASIWGTAAAAA
QFSQRVQMRWGALWPAALLGFVGSMLGAWGVTMFPGDFLRRALPVILLGVLLYTLARKDM
GRLHAPRFSGRAETLAACAIGLSIGFYDGFFGPGAGSFLVFLFVRWMGYDFLNASASAKI
INTLTNAAALILLAAKGHVWWHYGLVMAVANVAGSLLGTRVALRHGAGFVRVVFIVVVSA
LILKTAYDAFLK