Protein Info for GFF50 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 943 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 634 to 656 (23 residues), see Phobius details amino acids 668 to 686 (19 residues), see Phobius details PF07584: BatA" amino acids 6 to 80 (75 residues), 67.3 bits, see alignment E=1.3e-22 TIGR02226: N-terminal double-transmembrane domain" amino acids 6 to 84 (79 residues), 64.1 bits, see alignment E=5.5e-22 PF13709: DUF4159" amino acids 705 to 923 (219 residues), 171.6 bits, see alignment E=1.6e-54

Best Hits

KEGG orthology group: None (inferred from 85% identity to xau:Xaut_2946)

Predicted SEED Role

"FIG003603: membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (943 amino acids)

>GFF50 hypothetical protein (Xanthobacter sp. DMC5)
MFGLPLAFSAPLLLTAFLALPLLWFLLRVVPPKPREVSFPPLRLLFGITPKEESAARTPW
WLTALRMLLAALVILAAAGPIWNPPAAAPTGSGPLLLVIDQGWPAAASWEARRSAAAALI
DEAETNGRGVALIPTGDVPREATLSTPAAARDRLRSLEPVPYAPARKEALALAGRLLGSE
PNAGVVYISDGVDLGADPDTARAFADLGAGARLLVVGGGVAEPLALAGAENAAEALTVKV
LRPTTGAPRAGRVTARDMRGLVLAEAPFTLPEGASEVDARFDLPVELRNEVARLEIAGEH
SAGAVQLLDKRWRRRAVGVVSGTSTDTGQPLLAPTYYLSRALGPFADLRVAETGSATENI
NRFLDQRLPVLALTDVGTIPPATRNRLAKFVEDGGVLIRFAGPRLANAQDDLLPVRLRRG
GRVLGGSLSWETPQKLGSLTPEGPFRDIKPADDVTVNRQVLAEPDGTLGDRTWATLADGT
PLVTGTRRGKGALVLFHVTGDTSWSNLPLSGTFVEMLRHVVALSDAPPPPETAPAGAAVQ
PAGRPDVAALPPARVLDGFGAFRPAGPTARALPADYRGRSTADHPPGFYGPPDGLLAVNT
LLPADRPKALDLAALGGRTEPLQESAPRDMRGPILIGAMLLLLLDALAVLFLAGGLSRMG
GTRPRPGAAAILLAAVMLGATPGAFLPTPARADDSFALKATTQTRFAYVVTGDSEVDDIS
RAGLDGLATFLAQRTALQAGEAMGVDIGKDELAFFPVLYWPILANTPVPPQPVLARIDAY
MKQGGTVIFDTRDAIESPGGPGAPLTPAQARLKEILSRLDIPELEPVPRDHVLTKAFYLL
KDFPGRFTGGTTWVEALPAARDDADRPARAGDGVSPVIITSNDLAGAWAVSRSGEPMLPL
TPGEPRQREIAFRAGANMVMYVLTGNYKADQVHVPALLERLGQ