Protein Info for GFF4972 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: PUTATIVE TRANSMEMBRANE PROTEIN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 PF01370: Epimerase" amino acids 6 to 85 (80 residues), 25 bits, see alignment E=1.2e-09 PF03435: Sacchrp_dh_NADP" amino acids 7 to 131 (125 residues), 45.5 bits, see alignment E=9.4e-16

Best Hits

KEGG orthology group: None (inferred from 61% identity to ctt:CtCNB1_2378)

Predicted SEED Role

"PUTATIVE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>GFF4972 PUTATIVE TRANSMEMBRANE PROTEIN (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRNYRVLVTGGYGFFGSRLVERLARHPNLSLVVAGRHPAPAEALLQTLRPTAQAQLHSAI
LDVHTPSLEIALAQWKPDVLVHTSGPFQGQNLHVAQTCIRQRVHYIDLADGRGFVTGIGA
LDAAAKSAGVRVISGASSVPALSGAAVDHLTRDMARVRSIDIGISPGNRTDRGLSTVQGI
LSYCGKPIAHADGHSEVGWGRSHRHRYGVPVGSRLLSPCEVPDLSLLPARCAGSPTVRFG
AGLELPFLHRGMNLMALATRLGLVRDWAAHARLLLRTADLFKTWGSDAGAMHVRVHGVDH
RDRPVARTWELIATEGDGPYVPTLAASALVQKLATGEPLPSGARPCLGLLSLRDFEAAAA
GLNITTRLEE