Protein Info for GFF4946 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 76 to 99 (24 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 135 to 152 (18 residues), see Phobius details amino acids 164 to 190 (27 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 225 to 242 (18 residues), see Phobius details amino acids 262 to 281 (20 residues), see Phobius details amino acids 293 to 309 (17 residues), see Phobius details amino acids 315 to 332 (18 residues), see Phobius details amino acids 344 to 361 (18 residues), see Phobius details PF09594: GT87" amino acids 57 to 306 (250 residues), 31.8 bits, see alignment E=1.2e-11 PF13231: PMT_2" amino acids 59 to 218 (160 residues), 50.7 bits, see alignment E=2.4e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>GFF4946 hypothetical protein (Sphingobium sp. HT1-2)
MAPSRRLRLPLAALLVSALIGWFLIAAIAAPFDHDESQYVAGAYFSGHAVMFRDFLYLQP
PLHAWGLAPLSLIASGHMVLAMRLATAIMALATLALIWAAQRTAGISRSSATLAMLLMAA
TAAFQFSGSVVRNDMLATLLASAAMLLTLLGLRHRSDRHWLGAGILYGLAIATKLNFAPL
GATVGLFVIASGGRHAIRAALCLALGALLGMAPMAIAWASGPDGFLYGVLTYGMTAPHAW
YAANGAAQELTTFEKLRDLLKYLWKGPALVALLLLIANWIATRGRMRSSGRRLAIWMSVG
ALIGAALPTPTQLQYLMPLLPPLALALGYLLDDARHWRPLRRKAMLALLCLATIPGLIPS
IRDLVTAARAGSPLLAAQANAHWLGMTVRAAGGADILTLSPHLAIDSGLALDPRLATGPF
VYRTGWTLRPEQARRLHALTPAALPGLDRAMPAAILTGYEHGTRKLPLRPDDGLDNYARH
HGYRMVPMPDGVGRLYLRD