Protein Info for GFF4894 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Cell division protein FtsK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1344 transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details PF13491: FtsK_4TM" amino acids 39 to 210 (172 residues), 141.3 bits, see alignment E=5.1e-45 PF17854: FtsK_alpha" amino acids 855 to 955 (101 residues), 102.1 bits, see alignment 3.4e-33 PF01580: FtsK_SpoIIIE" amino acids 963 to 1176 (214 residues), 287.7 bits, see alignment E=1.1e-89 PF09397: FtsK_gamma" amino acids 1279 to 1339 (61 residues), 94.3 bits, see alignment 6e-31

Best Hits

Swiss-Prot: 98% identical to FTSK_SALTY: DNA translocase FtsK (ftsK) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K03466, DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family (inferred from 84% identity to cro:ROD_09541)

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1344 amino acids)

>GFF4894 Cell division protein FtsK (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VLLSVLASGGKSLEPGEPFLSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAAL
LSFNPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ
STDDYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSS
GGTIMLLCIWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYDDEY
DEETDGVQRESRRARILRGALARRKRLAEKFSNPRGRQTDAALFSGKRMDDDEDIQYSAR
GVAADPDDVLFSGNRATQPEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAASADPIMQT
PPMPGAEPVVAQPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQSAPWQQPVPV
ASAPQYAATPATAAEYDSLAPQETQPQWQPEPTHQPTPVYQPEPIAAEPSHMPPPVIEQP
VATEPEPDTEETRPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKENVPVKPTVSVA
PSIPPVEAVAAAASLDAGIKSGALAAGAAAAAPAFSLATGGAPRPQVKEGIGPQLPRPNR
VRVPTRRELASYGIKLPSQRIAEEKAREAERNQYETGAQLTDEEIDAMHQDELARQFAQS
QQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSGEQPAGAQPFSLDDLDFSPM
KVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQPQYQQPQQPVAPQPQYQQPQQPVAPQP
QYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPTAPQDSLIHPLLM
RNGDSRPLQRPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYS
PGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQT
VYLREVLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMI
LSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYK
LMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVLVDEFAD
LMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID
SRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDG
ITSDSESEGGGGGFDGGEELDALFDQAVNFVTQKRKASISGVQRQFRIGYNRAARIIEQM
EAQGIVSAQGHNGNREVLAPPPFE