Protein Info for GFF4869 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Segregation and condensation protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF04079: SMC_ScpB" amino acids 9 to 167 (159 residues), 161.1 bits, see alignment E=8.8e-52 TIGR00281: segregation and condensation protein B" amino acids 10 to 174 (165 residues), 109.7 bits, see alignment E=6.5e-36

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 67% identity to dac:Daci_5025)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>GFF4869 Segregation and condensation protein B (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNTTDAKRVLETALICAPQPLSVRELGALFEAEVSADTLKTLLADLQLEWTGRGVELVQV
ASGWRFQSRPELRPYLDRLHPEKPPRYSRATMETLAIIAYRQPVTRGDMEDIRGVTINSL
IIKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLSSLDQLPPLESNEIQESALDRL
DFEALSSNLSPEAADVADESEAPALVETMADAETPTPDTQTSAPSTQEHHEPGEHPSSDA