Protein Info for GFF4861 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Mlr7403 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details PF09976: TPR_21" amino acids 17 to 210 (194 residues), 209.7 bits, see alignment E=3.6e-66

Best Hits

KEGG orthology group: None (inferred from 62% identity to pna:Pnap_1874)

Predicted SEED Role

"Mlr7403 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>GFF4861 Mlr7403 protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MAKHLDLEEQEQIDQIKHFWAQYGNLISWVLIVVFGSFAAWNGWNYWQRTQGVKAAALYD
EVDRAVLARDTDRVERALADMQAQFGGTTFATQAALLAGKTLFEAGQVDKARAALNWVVD
KSGDASYQAVARLRLAALDVEAKAFDQALKTLDASVPKSFVPLVADRRGDVFMAQGKTDE
AKAQYQSAWQALGERTEYRRLVEVKLAALGVDTASLTSTAR