Protein Info for PS417_24815 in Pseudomonas simiae WCS417

Annotation: ethanolamine transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 105 to 130 (26 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 251 to 277 (27 residues), see Phobius details amino acids 299 to 322 (24 residues), see Phobius details amino acids 347 to 364 (18 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details TIGR00908: ethanolamine permease" amino acids 21 to 465 (445 residues), 674.3 bits, see alignment E=4e-207 PF00324: AA_permease" amino acids 46 to 434 (389 residues), 104 bits, see alignment E=8.6e-34 PF13520: AA_permease_2" amino acids 63 to 446 (384 residues), 142.2 bits, see alignment E=2.4e-45

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU5442)

Predicted SEED Role

"Ethanolamine permease" in subsystem Ethanolamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U1U7 at UniProt or InterPro

Protein Sequence (477 amino acids)

>PS417_24815 ethanolamine transporter (Pseudomonas simiae WCS417)
MPSEPTGSSVDFEKVDTDYFQQRELKKGAAGWVLLVGLGVAYVISGDYAGWNFGLAQGGW
GGMFLATLLMATMYLCMCFSLAELSSMIPTAGGGYGFARSAFGPWGGFLTGTAILIEYAI
APAAIAVFIGAYCESLFGIGGWMIYLAFYIIFIGIHIFGVGEALKLMFVITAVAAIALGV
FLVAMVPHFNVANLLDIPVTEAKGASTFLPFGYVGVWAAIPYAIWFFLAVEGVPLAAEET
KNPKRDLPRGLIGAIVVLTSFALLILVIAPGGAGTYALVKSGNPLVEALALSYGGSTWMG
SFVNLVGLAGLIASFFSIIYAYSRQIFALSRAGYLPRKLSQTNKSKAPVLALVIPGIIGF
GLSLTGQGDLLILVAVFGATISYVLMMAAHITLRIRRPKMDRPYRTPGGIFTSGVALVLA
CVAVVAGFLVDPRVVIGAAIIYGVLIAYFAFYSRHHLVAGTPEEEFAAIQAAEAALH