Protein Info for PS417_02475 in Pseudomonas simiae WCS417

Annotation: N-acetylmuramoyl-L-alanine amidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF11741: AMIN" amino acids 30 to 128 (99 residues), 73.6 bits, see alignment E=1.8e-24 PF01520: Amidase_3" amino acids 177 to 395 (219 residues), 153.4 bits, see alignment E=9.7e-49 PF01476: LysM" amino acids 424 to 466 (43 residues), 51.6 bits, see alignment 1.1e-17

Best Hits

KEGG orthology group: K01448, N-acetylmuramoyl-L-alanine amidase [EC: 3.5.1.28] (inferred from 98% identity to pfs:PFLU0517)

Predicted SEED Role

"N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)" (EC 3.5.1.28)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.28

Use Curated BLAST to search for 3.5.1.28

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9B4 at UniProt or InterPro

Protein Sequence (473 amino acids)

>PS417_02475 N-acetylmuramoyl-L-alanine amidase (Pseudomonas simiae WCS417)
MRFRALVAVVGVLLAAMTVNALAASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPD
RLVIDINGATLAAPLKVSTANTPITAMRSAQRTPTDLRVVIDLKKVVTPKSFSLAPNAQY
GNRLVVDLFDNAADANPPPAPPPSVATVPAVPVNPSQPQVKLPPPPPAPAGKRDIIVVID
AGHGGEDPGASGSRGQHEKDVVLAIARELQRQINAMKGYRAELTRTGDYFIPLRGRTEIA
RKKGADLFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSL
DDKDKMLAGVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPS
ILVETGFISNSNEASKLATGSHQQALARSISAGVRQFFQQNPPPGTYIAWLRDSGKIAQG
PRDHRVQPGDTLAMLAVRFQVSAATLRSANNLKTDELKVGQVLTIPGTELAAQ