Protein Info for PS417_24630 in Pseudomonas simiae WCS417

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 PF02562: PhoH" amino acids 113 to 317 (205 residues), 323.5 bits, see alignment E=7.4e-101 PF13604: AAA_30" amino acids 120 to 270 (151 residues), 29.2 bits, see alignment E=1.1e-10 PF13245: AAA_19" amino acids 121 to 270 (150 residues), 32.4 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: K06217, phosphate starvation-inducible protein PhoH and related proteins (inferred from 98% identity to pfs:PFLU5405)

Predicted SEED Role

"Phosphate starvation-inducible protein PhoH, predicted ATPase" in subsystem Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UP01 at UniProt or InterPro

Protein Sequence (334 amino acids)

>PS417_24630 ATP-binding protein (Pseudomonas simiae WCS417)
MNAPIAEPHRFILEPFEARRFANLCGQFDEHLRLIEQRLSIEIRNRGNQFELIGEPQHTT
SAENLLRRLYRETKGSELSPETVHLYLQESAVEDLANNPVAEASVALRTKKGMIRPRGLN
QQKYVKEILGNDINFGIGPAGTGKTYLAVACAVDALEREQVRRILLVRPAVEAGEKLGFL
PGDLAQKIDPYLRPLYDALYEMLGFEYVAKLIERQVIEIAPLAYMRGRTLNNSFIILDES
QNTTVEQMKMFLTRIGFGSTAVITGDITQVDLPKGTKSGLGQVIEVLKDVPGISFTHFMP
KDVVRHPLVQRIVEAYERFEHRDDGLSKDVRRDA