Protein Info for GFF4804 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: InterPro IPR005806 COGs COG2146

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 PF00355: Rieske" amino acids 46 to 115 (70 residues), 65.3 bits, see alignment E=3.8e-22 PF19301: LigXa_C" amino acids 140 to 411 (272 residues), 90.4 bits, see alignment E=1.3e-29

Best Hits

KEGG orthology group: None (inferred from 69% identity to pol:Bpro_2133)

Predicted SEED Role

"InterPro IPR005806 COGs COG2146"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>GFF4804 InterPro IPR005806 COGs COG2146 (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKAELNQRMTQVGPGTPGGELLRRYWQPVALMDEFDPALAPQMAVRPVKAVRVLGQNFVL
FRNAQGEFGLLDRDCPHRGADLAFGRNEGDGLRCPFHGWKFDTTGQCIETPAEPAGSKMC
SRIKQRSYPLVQRSGVLFGWFGPEDQTPPPFPELDCFTAPESHTFAFKGLWHCNWLQSLE
VGIDPAHASYLHRFFNDGSLEDSYGKQFRGASAGDVGGERWPMTRVMREFDQPLISFESK
PYGLQLTALRPMTDELTHVRVTNSVFPQTFVIPLSETMTITQMHVPVDDTHNYWYAFFTS
FTGPVDKDAMRTPRLQAVTLPDYIPKSGRHNNWGFNAEEQQTRTYLGMGEDDINVHDQWA
CESMGPIQDRTREHLGTTDKVVMANRRMLLQAIDAVEQGGTAPGVADPAQHGAISGPDTV
DGIAPAQGWETWWQDAVRDKREGAPWHAKASAAETAGAK