Protein Info for GFF4803 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transcriptional regulator, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF00392: GntR" amino acids 4 to 58 (55 residues), 60.5 bits, see alignment E=9.9e-21 PF07729: FCD" amino acids 76 to 210 (135 residues), 52.1 bits, see alignment E=9.2e-18

Best Hits

KEGG orthology group: K11475, GntR family transcriptional regulator, vanillate catabolism transcriptional regulator (inferred from 84% identity to pol:Bpro_2134)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>GFF4803 Transcriptional regulator, GntR family (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSLQETVLMQLRDLILSGQFEPGHRLAEQQLAERLGASRTPVRAALVTLEQEGLVQANET
GKYLVRQFTAQEVIDAIAVRGHLEGMAARLVAEHGVSRQLQGQLQTVLDEGDRLLADNPL
TIESYAAYALMNDRFHALILDACGNRALQRSVELNDKLPFAPASAMLPMQGTVTMDRDWM
LYAHRQHHMLFDALRRGEGARAQALAVEHTEVAQMNMRLALERRAESEQVLPGIRLVVG