Protein Info for GFF48 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 19 to 172 (154 residues), 50 bits, see alignment E=1.1e-16 PF13439: Glyco_transf_4" amino acids 19 to 174 (156 residues), 57.1 bits, see alignment E=6.1e-19 PF00534: Glycos_transf_1" amino acids 201 to 313 (113 residues), 58 bits, see alignment E=2.3e-19 PF13692: Glyco_trans_1_4" amino acids 208 to 315 (108 residues), 48.5 bits, see alignment E=2.8e-16 PF20706: GT4-conflict" amino acids 219 to 307 (89 residues), 26.7 bits, see alignment E=7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>GFF48 Glycosyltransferase (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRIVLFTHPAFLASQSMPRFAQMLRNAYTARGHEVQVWSPPARVRRWVRGPLSKWAGYVD
QYLLFPIWVRRQLARQPDDTLFVMSDQALGPWVPLVRGRPLVVHVHDLLALRSALGEIPE
NRTGASGRIYQRYIRRGFQQARHFICISQRTREDLRRVGGIDPLSCEVVYNGLNQRFARI
PAAQARVQLRGAGMPVAPGGVLLHVSGGQWYKNVAGVLRLYAHYARAQRHPLPLWLVGVP
QTEAVQAVLREVPEQGTVHFLYGIDHALLQAAYSVSRAFLFPSLAEGFGWPIVEAQACGC
PVVTTDDTPMNEIGGPHTTYLPRLRSGDDGQAWAADGARRLHAVINEPVADALARSQACM
AWARRFDADRAIGQYLQVYGQVLAGEQVNLNADMARTPA