Protein Info for PS417_24455 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 signal peptide" amino acids 9 to 15 (7 residues), see Phobius details amino acids 29 to 32 (4 residues), see Phobius details transmembrane" amino acids 16 to 28 (13 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details PF00892: EamA" amino acids 15 to 147 (133 residues), 59.3 bits, see alignment E=2.4e-20 amino acids 157 to 280 (124 residues), 32.6 bits, see alignment E=4.2e-12

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU5369)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UL99 at UniProt or InterPro

Protein Sequence (292 amino acids)

>PS417_24455 membrane protein (Pseudomonas simiae WCS417)
MTVSTPLSGVNHPFKGILLIVLATFLFSSHDALSKYLAGFYPIVMVVWARYLVHTLLMAG
IFLPQSGLRVLRSKRPGMQVVRALCLLGTSLFFTTALHYIPLAEATAVNFLAPILVTALS
VPLLGEHVTRGQWLAVICGFVGVLIIIHPGGELFTPAVLLPLCSALFFCFYQLLTRILSQ
YDTPTTSNFFAGLCNTLVMSAMVPFFWQVPTLWHGALMLALGTCGMTAHLMLTQAFRFAA
PALLAPFGYCQIVFAGLLGWLVFNHTPDVTTVVGIGVICMSGLAAAWQQRRR