Protein Info for GFF4774 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Lipopolysaccharide biosynthesis chain length determinant protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 465 to 473 (9 residues), see Phobius details amino acids 494 to 514 (21 residues), see Phobius details TIGR03007: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily" amino acids 7 to 509 (503 residues), 515.3 bits, see alignment E=6.1e-159 PF13807: GNVR" amino acids 369 to 449 (81 residues), 31.1 bits, see alignment E=8.9e-12

Best Hits

KEGG orthology group: None (inferred from 62% identity to adk:Alide2_0690)

Predicted SEED Role

"Lipopolysaccharide biosynthesis chain length determinant protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>GFF4774 Lipopolysaccharide biosynthesis chain length determinant protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MHDLLNQISTTLRGMWKYRRLGVLIAWIVAAVGAAGVLMIPDRYEATSRVYVDTQSILRP
LMTGLAIQPDVEQQVAMLSRTLINRPTVEKLMQMAQLETAGQTKAQRDALVDNLFKSLAI
RSTGRDNLYTLSYRDENPERSLRVVKSLLTIFVESGKGAAGTDSDNARKFIEEQIKNYEN
KLSEAEARLKDFRLRNLDMQAQGGLDVAGRMAEMLSTLSQARLELREAESAREAARKQLE
QARSMARTAPDTSSLNLATPDLDSRIDALRRSLDALLQRFTDQHPDVLNTRRLIKELEDQ
KRREVAELRRAAAASPTSPVIENNPAIVEITRTLASAEVQVASLRARVGEYEGRAARLRE
QLKVAPQMEAELAQLNRDYEIHRKNYQDLVSRRETVLMSGELESTSNLADFRVVEPPQVS
RRPVAPNRALLLPVALLAALAAGVGVTFLVSQLRPVFFDASALRGVTELPLLGVVTLVKN
DAMRRRESRSLRRFLLAIMALVVLFLIGMVTLSYRSSL