Protein Info for GFF4770 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG004655: Polysaccharide deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 TIGR03006: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily" amino acids 8 to 276 (269 residues), 461.3 bits, see alignment E=4.3e-143 PF01522: Polysacc_deac_1" amino acids 40 to 148 (109 residues), 80.1 bits, see alignment E=1.3e-26 PF11959: DUF3473" amino acids 150 to 276 (127 residues), 183 bits, see alignment E=2.4e-58

Best Hits

KEGG orthology group: None (inferred from 73% identity to adk:Alide2_0694)

Predicted SEED Role

"FIG004655: Polysaccharide deacetylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>GFF4770 FIG004655: Polysaccharide deacetylase (Hydrogenophaga sp. GW460-11-11-14-LB1)
MPSQAPINALTIDVEDYFQVSAMAPYINRADWDRCECRVEHNIDRILQLLAAKNTHATFF
TLGWIAERYPDMVRRIVREGHELASHGYGHQRVSDLTEAEFFDDITRSKRLLEDLGGQAV
LGYRAPSFSIGANNLWALDTLKRAGYRYSSSIYPVKHDHYGMPDAPRFAYETRGGMMEVP
PTTLRLFNRNLPSSGGGYFRLMPYALSRWMLRQVNRQDAQSAIFYFHPWEIDPGQPRVAG
IDLKTRFRHYVNIGRTEQRLARLLDDFQWGRMDQIFMGDRKEVPVV