Protein Info for GFF4730 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR02122: TRAP transporter solute receptor, TAXI family" amino acids 14 to 322 (309 residues), 374.5 bits, see alignment E=1.8e-116 PF16868: NMT1_3" amino acids 40 to 322 (283 residues), 322.3 bits, see alignment E=5.6e-100 PF12974: Phosphonate-bd" amino acids 80 to 182 (103 residues), 32.7 bits, see alignment E=7.5e-12 PF09084: NMT1" amino acids 112 to 199 (88 residues), 29.6 bits, see alignment E=1e-10

Best Hits

KEGG orthology group: K07080, (no description) (inferred from 81% identity to azc:AZC_0323)

Predicted SEED Role

"TRAP transporter solute receptor, unknown substrate 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>GFF4730 hypothetical protein (Xanthobacter sp. DMC5)
MQRLSAAAKVFRPAHLAAAALSCALAFSPAAARAEFVNVLTGGTSGVYYPLGVAISKVIG
EKVPGTRPSVQATKASVENLNLMQQGKGEVAFTLADSLADGAAGKEEAGFKAPLTKVRAL
GGIYPNYIQIVASKDSGIKTIADLKGKRLSVGAPKSGTELNARAILNAAGLKYEDLGKIE
YLPFAESVELMKNRQLDATLQSAGLGVASIKDLANSVPIVVVEVPGTVIDKIGAPYLKTT
IPAGTYEGQSADVATAAVPNFLVTRSDLKDDEVYAITKAIYENLPELAAAHSAAKSITLA
NAMKGSPVAFHPGAEKFFKEKGVTP