Protein Info for GFF4729 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 709 transmembrane" amino acids 46 to 65 (20 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 128 to 144 (17 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 285 to 311 (27 residues), see Phobius details amino acids 318 to 342 (25 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 415 to 433 (19 residues), see Phobius details amino acids 439 to 455 (17 residues), see Phobius details amino acids 475 to 502 (28 residues), see Phobius details amino acids 512 to 531 (20 residues), see Phobius details amino acids 538 to 569 (32 residues), see Phobius details amino acids 571 to 588 (18 residues), see Phobius details amino acids 596 to 618 (23 residues), see Phobius details amino acids 631 to 658 (28 residues), see Phobius details amino acids 667 to 697 (31 residues), see Phobius details TIGR02123: TRAP transporter, 4TM/12TM fusion protein" amino acids 44 to 703 (660 residues), 701.6 bits, see alignment E=5.2e-215 PF06808: DctM" amino acids 139 to 620 (482 residues), 284.3 bits, see alignment E=7.9e-89

Best Hits

KEGG orthology group: None (inferred from 65% identity to oan:Oant_4100)

Predicted SEED Role

"TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (709 amino acids)

>GFF4729 hypothetical protein (Xanthobacter sp. DMC5)
MTSSLHTPQTVPPVSHDVNNPEHGAAVVVDDALLDLTWGPGAWGRAVFWIAVAFSTFQVI
TAAWSPLASQIVRSVHVGFLLLVVFAIAANHKTGTERLVLWGLGIFSFVVGLYHWVFYAA
LIQRAGDPSTMDIVVGTIAVALVFEGSRRLMGAALPIMCGGFILYGLFGEYLPAPLDHRP
FDYVQVVDQMFLGTEGIYGTPTYVSSSFIFLFILFGAFLERAGMIQLFNDLAMGTVGHAK
GGPAKVAVISSALMGTINGSGVANVVTTGQFTIPLMKRFGYKPAFAGAVEATASMGGQIM
PPVMGAVAFIMAETIDVPYATIATAAVIPAFLYFFTVFAMVHLEAGKDGLSGLPKDKCPN
AWLALRNNWYLILPLAALVWLLFSGYTPLFAGTVGLALTALIVLGAPVARLIGPYGLRVV
FWIVLGLSAASFVEYGINGVATVIAVLVAILFFVKGGRETLRISIESMADGARNALPVGI
ACALVGTMIGVFTLTGVATTFATFVVEVGKNSLFLSLVLTMIACLILGMGLPTIPNYIIT
ASIAGPALLALGVPLIVSHMFVFYFGIMADLTPPVALAAFAAAPIAGASGQTIGWIATRI
AVAGYVVPFMAVYAPALMLQNGDPMADIIGFWPAVAYVFVKAIVAIILWAATATGYLLAP
LNILERIIAFSAAALLILALPMTDEVGFAASAAFIGWHYWKSRTRPVAA