Protein Info for GFF4713 in Variovorax sp. SCN45

Annotation: Uncharacterized protein YhiN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00890: FAD_binding_2" amino acids 6 to 58 (53 residues), 37.2 bits, see alignment 5.4e-13 PF03486: HI0933_like" amino acids 6 to 399 (394 residues), 281 bits, see alignment E=2e-87 PF01266: DAO" amino acids 6 to 124 (119 residues), 30.9 bits, see alignment E=5.2e-11 TIGR00275: flavoprotein, HI0933 family" amino acids 7 to 398 (392 residues), 383.7 bits, see alignment E=4.8e-119 PF22780: HI0933_like_1st" amino acids 194 to 347 (154 residues), 126.2 bits, see alignment E=2.9e-40

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 92% identity to vpe:Varpa_4056)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>GFF4713 Uncharacterized protein YhiN (Variovorax sp. SCN45)
VSHRFDVVVIGAGAAGLFCAGVAGQRGLKVLLVDHSEKVGEKIRISGGGRANFTNRDLDV
RAPQRHFIGDNPNFCRSALSRYAPQQFIELVQKHGIAFHEKHKGQLFCDGSSQQIVDMLL
AECAAGGVERWQPCKIGNIASTGSGSYQIESNRGPIETPKIVVATGGLSIPQIGATDFGY
RIAEQFGLRVVTPRPALVPLTFGGEAWEPYAGLAGLALPVRIETGAKKEKMAFLEDLLFT
HRGLSGPAVLQISSYWKPGAPLTLDFAPGVDVAESLGEAKLRSKKRIANELATLVPSRLA
DAWVGQDPALQRPVNEAADKALAALSERIARWQITPSGTEGYKKAEVTAGGVDTRDLSSQ
TMESKQPGLFFIGEVVDVTGWLGGYNFQWAWASAHACATAL