Protein Info for GFF4709 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 55 to 78 (24 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 150 to 175 (26 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 214 to 237 (24 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details PF01925: TauE" amino acids 32 to 261 (230 residues), 89.6 bits, see alignment E=1.3e-29

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 79% identity to vap:Vapar_3543)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>GFF4709 putative membrane protein (Variovorax sp. SCN45)
MPHFRARASPADSAAMTMPTNDAMTFWAAATAVYLLAGVIKGVVGLGLPTVSMGLLALWM
SPVQAAALLIVPSLVTNIWQTGPRATFMPVLRRIGGMQVGVVIGTLGGALWLGVPAGAWA
SFALGVALVVYAVWGLTGRQLHVSDAQARWMGPLVGIVTGLVTAVTGVFAVPAVPYLQAL
GFQRDSLIQAMGISFTTSTVVLAIGLAGNGGYPVSALGGSFAMLVPAIGGMVLGTWLRQR
LSVAVFKRCFLIGLALLGLYMAARAGL