Protein Info for GFF4671 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Phage terminase, large subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 PF05876: GpA_ATPase" amino acids 18 to 281 (264 residues), 283.4 bits, see alignment E=1.8e-88 PF20454: GpA_nuclease" amino acids 303 to 621 (319 residues), 313.6 bits, see alignment E=1.3e-97

Best Hits

KEGG orthology group: None (inferred from 100% identity to sed:SeD_A1405)

Predicted SEED Role

"Phage terminase, large subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>GFF4671 Phage terminase, large subunit (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKISDAVRKYMRVPRDAGNSVAWESTLTPYVVEAMNCLSSRSYDAVVFVAPARTGKTLGL
IDGWISYNIVCDPSDMLVVQMTQDKAQEHSKRRLAKMFRHSPAIARRLSPHRNDNNVHDK
TFRDGSFLKIGWPSINVFSSSDFKCVALTDYDRFPEDVDGEGDAFSLASKRTTTFMSLGM
TLVESSPGREITDTRWKPSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGEYFQPSMANM
TGYRHIADPMEASEAARIQCPHCHKLTEPQQKRELNNRGVWLREGQHIDRDGNITGEARR
SRIASFWMEGPAAAYQTWAQLVYKLLTAEEEYERTGSEETLKAVINTDWGLPYQSRRSLE
ARSGDALMARAEDVSKRTVSDGVRFIVATVDVQGGKKRRFVVQVVGYGAYGERWIIDRYN
IRYSLRVNEDGESQPVNPAARPEDWDLLKTDVLEKTYPLAADPEQFMPVLAMAVDSGGED
GVTDNAYAFWRRCKRKGVAGRVYLFKGDSTRREKLITKTYPDNTERSERRAKARGDVPLY
LLQTNALKDRVAAALEREEPGANYIHFPDWLGPWFYEELTYEERSADGKWKKPGRGNNEA
LDLMCYAHALAILRGYERINWEKPPGWARLPEKDAAKTTQPVEVRQQEQHEGGEKAVKAR
KKKILPAWGGGSGGGWL