Protein Info for PS417_23830 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01636: APH" amino acids 106 to 282 (177 residues), 29.3 bits, see alignment E=7.9e-11 PF13671: AAA_33" amino acids 338 to 485 (148 residues), 136.9 bits, see alignment E=6.3e-44

Best Hits

KEGG orthology group: K07028, (no description) (inferred from 97% identity to pfs:PFLU5224)

Predicted SEED Role

"FIG00955330: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6L9 at UniProt or InterPro

Protein Sequence (518 amino acids)

>PS417_23830 hypothetical protein (Pseudomonas simiae WCS417)
MSQSLIAALQNPALYPHPVEAFQVIETHISWVVLTGPYAYKLKKPMNFGFLDFTDLEKRG
HFCNEELRLNQRLTEDLYLEVLPITGSAEAPQLGGDGPVIEYALKMRQFPQSQLLSTLQA
NGELTSAHIDEMAKQIAHFHLTAPKVPQEHPAGTPDEVMAPVRQNFDQIRPFLSDKSNLA
QLDALQAWAESSFERLKPLFSQRKKDGFTRECHGDIHLGNATLINGHVVIFDCIEFNEPF
RFTDVYADTGFLAMDLEDRGLKSLARRFISQYLELTGDYQGLEVLNFYKAYRALVRAKIA
LFSMPSEASPVQRATTLRQYRNYANLAESYSTIPSRFLAITHGVSAVGKSHVSMRLVEAL
GAVRLRSDVERKRLFGEQHVENTPQAGIYAADASAATYARLNEIADTVLRAGYPVVLDAT
FLKREQRDAAAKVAEATGAPFLILDCNAPQAVIASWLAQRQADKNDPSDATLTIIEEQQA
NRDPLTAEELRLSKRVETNESGTLDALVAHIRQRLPGL