Protein Info for GFF4654 in Variovorax sp. SCN45

Annotation: Acid phosphatase (EC 3.1.3.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF04185: Phosphoesterase" amino acids 226 to 705 (480 residues), 288.1 bits, see alignment E=1.1e-89 TIGR03397: acid phosphatase, Burkholderia-type" amino acids 226 to 734 (509 residues), 746.2 bits, see alignment E=1e-228

Best Hits

KEGG orthology group: None (inferred from 66% identity to rsl:RPSI07_mp1207)

Predicted SEED Role

"Acid phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (738 amino acids)

>GFF4654 Acid phosphatase (EC 3.1.3.2) (Variovorax sp. SCN45)
MMTPTHSSSAPARGRRYVRHLTLWPTAVAAAVLAVACGGSDDHPAGSVGGTATSGVVTGS
YYRNAKVCIDANNNGRCDPSETTAITDANGAFTLYAQGPVVVEIGTSSKRYDPVTKTETA
VTQPLVFRAPAAANGVVSAITTELSALMDSNGGNFAAARTALAARIGVSEAQLLADHNKV
TDATVKTALQNEIDQSIERIAEAVAEAGTGGDVIAALRNRFALDQITNVVVIYAENRGFD
NLYGLYPGANGIPGVNPTSSTKTPEPQKDFDGSTLPALPPVWSGVTAPGQTTTIIEAKTV
GMPNKMFQIDDPAGFYNTGTVIDQSVISRDLIHRFYNNQMQINGGKNDKFAAYSDAGGLS
MGYYDGSKMKLWKVAQNFTLADNFFMGAFGGSFLNHQYLVCACAPLYPNADAANSPANKS
ISAIDTDANGNFVRLTPAANASTSVLNAAPSYLKDSTLTPKDAAGNFYAVNTMQPPYQPS
SVAPAGADTKLFANPANASTLPPQTQATIGDLLTAKGLSWAWYAGAWNDTTAIATSGNRT
FPPAVPPAAQTPNFQFHHQPFNYYAAFDPVAHPDARAAHLKDFDNDFLKDVAAGTLPAVS
FYKPQGNLNQHAGYASVADGDAHIADVLAKLQASPQWKNMLVVVTYDENGGFYDHATVPK
GDRWGPGTRIPALIVSPYAKKGFVDKTQYDTASTLRFITHRWSLPPLQGLVDRDTALVKN
GSHPMGDLTGALDFGKKS