Protein Info for GFF4629 in Variovorax sp. SCN45

Annotation: Glycosyl transferase, group 2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 PF00535: Glycos_transf_2" amino acids 47 to 156 (110 residues), 93.2 bits, see alignment E=3.7e-30 amino acids 304 to 423 (120 residues), 66.4 bits, see alignment E=6.3e-22 PF13641: Glyco_tranf_2_3" amino acids 303 to 551 (249 residues), 62.3 bits, see alignment E=1.4e-20

Best Hits

KEGG orthology group: None (inferred from 55% identity to bcm:Bcenmc03_0849)

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>GFF4629 Glycosyl transferase, group 2 family (Variovorax sp. SCN45)
MRWELGRRIAGHNDYVRWVRDYDTPTPEARNRISQRVAAMQTRPLISVVMPAYNPNPSWL
REAIESVRAQIYPNWELCIADDASPSPEVRAVLQSYAESDPRIKVVFRPKNGHISAASNS
ALEVASGTWIALMDHDDLLPADALFWVADCIAAHPDVRLIYSDEDKVDEAGNRSGPYFKS
DWNIDLFRSQNMFSHLGVLSMDLVRAVGGFRQGLEGSQDWDLVLRCMEHVEARQIRHIPR
VLYHWRVHAESTAKSMNAKPYAALAGERALNEHFERTHVRATAEYLGFGYRARYALPESL
PLVSLVISTRNAAASLRRCVNSIVGNTTYARFEIVIADNASDDTSTRDYYQSVAQMQNIR
VLRHEEVLDDGALKNSAVEAAQGEVIALLDDSLEVITPEWLSEMVSLALQPGVGAVGTRL
WHRSRTLQHAGIILGLGPDGVAGFSHQGMPGGREGYAGRAALIQSLSAVTGACLVIRKVH
YQQAGGFDADHLKQAFADVDFCLRLGELGLRTVWTPYAELVHHVPAGSTAKRGAQASGAY
LQDVAYMKQRWGTLLQNDPAYNPNLMLTPEDFSYAWPPRLDPV