Protein Info for GFF4628 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: putative glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 transmembrane" amino acids 392 to 412 (21 residues), see Phobius details amino acids 482 to 499 (18 residues), see Phobius details amino acids 542 to 558 (17 residues), see Phobius details PF17994: Glft2_N" amino acids 5 to 131 (127 residues), 39.5 bits, see alignment E=8.2e-14 PF13641: Glyco_tranf_2_3" amino acids 148 to 352 (205 residues), 29.8 bits, see alignment E=8.4e-11 PF00535: Glycos_transf_2" amino acids 150 to 251 (102 residues), 28.7 bits, see alignment E=1.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to spq:SPAB_02809)

Predicted SEED Role

"putative glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (592 amino acids)

>GFF4628 putative glycosyltransferase (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MYFLLQKVILPNIDLCTEEQLYFRTQGGKYNYTSRNLLVPRHKVAYFDTFFNAFSIKKWK
KYTTLTSLFLRVNIIGRGTITVRHKENGVIRVLKQIDFKSSCNISDEIEIDISKINFGYI
YVEWQSDEDSVLNGFELLTKDHVSKSSMALVITTYNRKEAVTKTINRINKTLLTQSEFKD
RFKLIVVNNGEAINHPSGNGIIVINNENLGGSGGFMRGLIEAGKINDVKHVIFMDDDGSC
EIESICRTHAFLLMAKDKNTVVTGCMLFEDNPAIIHESGAIWHRDFLHYPDKHYLDAREI
DSLDTFDNERKIGYGGWWFFAFNINAIEYYSFPFFVRGDDLLFGYMHKKHNIVTLNGVAS
WQMDFERKISVLNSYLNFRTVAVPALISKRKFAALLLSVFFVREVFLASFSCRYELARAM
IMSYNDCLSGREFWEDNVDLLEIRKRINAITHNEKFNVEGIDIVNGCVDYPCSGKEKAIY
KFFRCITLNGHLIPAFFLIKKPIVVDYRHYHPTKFSFRRITIYHLNIENGKLLKLTHSKM
EFFKVIINGLFTAVKNFYRFKSAKKEMKNSLPYLTSKLFWYKKFNKKSEDKY