Protein Info for GFF4615 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG137478: Hypothetical protein YbgI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 TIGR00486: dinuclear metal center protein, YbgI/SA1388 family" amino acids 1 to 246 (246 residues), 274.2 bits, see alignment E=5.8e-86 PF01784: DUF34_NIF3" amino acids 6 to 234 (229 residues), 203.8 bits, see alignment E=1.8e-64

Best Hits

Swiss-Prot: 100% identical to GCH1L_SALTI: GTP cyclohydrolase 1 type 2 homolog (ybgI) from Salmonella typhi

KEGG orthology group: None (inferred from 99% identity to ses:SARI_02225)

Predicted SEED Role

"FIG137478: Hypothetical protein YbgI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>GFF4615 FIG137478: Hypothetical protein YbgI (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKNTELEQLINDKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLQADAV
IVHHGYFWKGESPVIRGMKRRRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV
KGEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDTGPENVQRVAWCTGGGQSFID
SAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTALDVTF
IDIPNPA