Protein Info for GFF4609 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transposase for insertion sequence element IS1071 in transposon Tn5271

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 PF13700: DUF4158" amino acids 3 to 98 (96 residues), 32.9 bits, see alignment E=6e-12 PF01526: DDE_Tnp_Tn3" amino acids 500 to 887 (388 residues), 337.6 bits, see alignment E=9.1e-105

Best Hits

KEGG orthology group: None (inferred from 47% identity to pol:Bpro_2470)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>GFF4609 Transposase for insertion sequence element IS1071 in transposon Tn5271 (Hydrogenophaga sp. GW460-11-11-14-LB1)
VLLRHLTSTLGMSATDIASVTSLYKNRDTRFEHQLWARQRVGFAALDDTTKSLLADTLRE
LATTAVSVNDLVHQSEHWLFDRRLVLPGDRTLRDMARAAFADQENAALETIRAGVPREHI
HRALLHAFSKRSGPGGHTVLEWLRTPPGKHGQLTLSEVTKKIECLKALRVHEWNLSAIAL
NRLKAYSQEVVNRPPSATKNLSTEQRELEIVSFLHVTLLEQTDLAAEMGARRLTDLYRKA
SGKVLKKQADSSVDLRAERVKLKEVLYSKKLTAVQIVAAMRELVPQDEPAFASTRAQLVR
EALVKEEAPRVSALLNSLGILEIRGEASDKALRQLKLLRDLAKRRETSLPEGTDVSFADP
GWHLLLQGSDRKLALAALKVSAATALRKAIKGGKLWLAHSSRHRSRADQLMSEQEWTDKN
KSLIRALSLTDDPDKFLGRVLERVDAGLAQLAKAVEEGALTIDNQGHISIAPIQALEVEP
QVTKTRESMFNMIGGAQFADMLVEVDAKTRFSQALLGRMAKDIGELKAVYGALYAHGTEN
NAKGVCAMISGLQVSQISMAMRALEASGRLREANTRIIDFQQSMPIAMLWGQGDKASSDS
MTLDTSRHLHSARMEYRRKQHGMGIYVHMLDTWALFHDQPIVINDRQAAPAVHGVEAHNC
TRREDQIRLSLLAVDTHGYTNAAMAIAKLLGFDLCVRLRQLSERKMFMAWGTAPPESLER
LVVGKVSLRKIRAGWMELLRLIASIRQGRLTAAEAIARLGSAARGDAVHAAADELGKLLR
TVFLCDYFTIPEFRREMHALLNRGESIHLLQRAVYHGRVGVSRGRRADELRAISTSHTLL
TNVVIAWNTMKMQDVVDRWKALKHPIEDHWIRRIGPVHFEHVNFKGTITFEIDSYADALI
QRQSKVRARRV