Protein Info for PS417_23470 in Pseudomonas simiae WCS417

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF00989: PAS" amino acids 7 to 119 (113 residues), 44 bits, see alignment E=4e-15 PF13188: PAS_8" amino acids 7 to 61 (55 residues), 32.8 bits, see alignment E=9.5e-12 TIGR00229: PAS domain S-box protein" amino acids 10 to 128 (119 residues), 68.7 bits, see alignment E=2.5e-23 PF13426: PAS_9" amino acids 16 to 120 (105 residues), 70.9 bits, see alignment E=1.9e-23 PF08447: PAS_3" amino acids 31 to 115 (85 residues), 38.4 bits, see alignment E=2.4e-13

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfs:PFLU5153)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBW0 at UniProt or InterPro

Protein Sequence (155 amino acids)

>PS417_23470 histidine kinase (Pseudomonas simiae WCS417)
MINAQLMQMVIDASNDGIVIAEREGKDLPLIYVNPAFERLTGYTRDEILYQDCRFLQSGD
RDQPALIAIREALSAGESCRETLRNYRKDGTHFWNELSLSTTYNPADKQTYFVGVQKDVT
VQVKAQQRVAQLEAQVAELKAELAALKATSGSNKN