Protein Info for GFF4580 in Hydrogenophaga sp. GW460-11-11-14-LB1
Annotation: Selenoprotein O and cysteine-containing homologs
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 68% identical to SELO_POLSJ: Protein adenylyltransferase SelO (selO) from Polaromonas sp. (strain JS666 / ATCC BAA-500)
KEGG orthology group: None (inferred from 68% identity to pol:Bpro_2581)Predicted SEED Role
"Selenoprotein O and cysteine-containing homologs"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (489 amino acids)
>GFF4580 Selenoprotein O and cysteine-containing homologs (Hydrogenophaga sp. GW460-11-11-14-LB1) MAAQLDLGLAWHNRFASLGEAFYTFRAPTPLPSPHWVGTSPAVADLLGLDRAWLASPAAL DAFTGNLPIAGTQPLASVYSGHQFGHWAGQLGDGRAILLGEVDTPSGPQEVQLKGAGLTP YSRMGDGRAVLRSSIREFLCSEAMHALGIPTSRALCVTGSPAPVRREEIETAAVVTRVAP SFIRFGHFEHFSHHGLHGELRQLADFVIDRFYPACREAAGNPYAALLEAVSARTAEMVAQ WQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFNPGHVCNHSDTGGRYAYNRQPNIAYW NLFALGQALLPLMDDQQQALDALEPYKALMPAALQRRMNAKLGLSRTEDGDAELTESLMK LMAADAVDFTIFWRRLSHAVAGALDPVRDLFLQREAFDAWAVRWQERLRAETGFDAAATQ ARMLRTNPQVVLRNHLGEIAIQRAKQGDFSELARLQYALEHPFEALAGQEDLAAFPPDWA SQIEISCSS