Protein Info for PS417_23415 in Pseudomonas simiae WCS417

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 PF00165: HTH_AraC" amino acids 196 to 236 (41 residues), 29.1 bits, see alignment 8.7e-11 amino acids 248 to 287 (40 residues), 41.5 bits, see alignment 1.1e-14 PF12833: HTH_18" amino acids 209 to 287 (79 residues), 83.5 bits, see alignment E=1.1e-27

Best Hits

KEGG orthology group: K07506, AraC family transcriptional regulator (inferred from 98% identity to pfs:PFLU5145)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1UQF3 at UniProt or InterPro

Protein Sequence (291 amino acids)

>PS417_23415 AraC family transcriptional regulator (Pseudomonas simiae WCS417)
MPDLESLQVFQALNRSPNARLEACAELGDGLSAALWSNHHDAQDYQAPSHHTLSCYIGGG
TGTFRRDQPGTKGGPDKLCILPAEHQSAWVINGEIRLAHVYFSPEQFALGCVTLLDREPR
ALQLRESTFLEDASQARRFHQLIALNWHEPAERLLTSSLAHEMLSHTLLSQVGAREGLRL
KGGLAAHQRRRLAEYIDQHLEDPISLGQLAGMCALSEYHFARMFRQSFGLPPHQYLLARR
LTRAQALLRSGALPLGEIALMCGFSSASHFTHRFRQAMGATPGEYRQAFCA