Protein Info for GFF4566 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG00638911: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 transmembrane" amino acids 468 to 487 (20 residues), see Phobius details PF27158: DjlB_C_2nd" amino acids 70 to 159 (90 residues), 69.9 bits, see alignment E=8.2e-24

Best Hits

Swiss-Prot: 59% identical to DJLC_ECOLI: Uncharacterized J domain-containing protein DjlC (djlC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to stm:STM0658)

MetaCyc: 59% identical to co-chaperone DjlC (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"FIG00638911: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (490 amino acids)

>GFF4566 FIG00638911: hypothetical protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNICWEILGIEPTTDLECIRQAYLALLPSFHPESDPQGFKRLRQAYEEAQHWAASPAEDA
KMEEVGDEHEILVAFRELLASERDRFQPSAWQKFIQQLNQCSMDEIDKLRWQLCDIAMKT
ETISLSCLALLAQRLNWQPQEAEDDADGEELEAFLETVKRGDAFDLLSLAKLPLVVQDQT
DAYFFKLEHIWRFYPEHFADALQVQGAWIIPDDKQLHRKLLHWFSAEQWGMAELVDIARR
WQAAEPDNEDAHYYLCKQRLLCGEGESLLADLCDFWQRYPSTQADDLLLGWCRQHRPDFF
PLAVMAVEARCMADAEYVPGESARTRLLWADILHSGRLSPLGRSFVDSLFYKRKAMAWAN
SRLSTQGEPETPLLDLYRTAEQVVLEAFPKEKPFFRLLIRLEEGQSCPLEALITQALSSK
IAMKPGDIRDKKELAEELRLAAEKEETKLSSEAKTEAPRQAESGGVMKIMKIVGLIALIV
CALNRFFHFF