Protein Info for GFF4558 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: PE_PGRS family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 PF15984: Collagen_mid" amino acids 72 to 268 (197 residues), 139.9 bits, see alignment E=5.3e-45 amino acids 277 to 363 (87 residues), 59.2 bits, see alignment E=2.7e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>GFF4558 PE_PGRS family protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
LLVLGGCSGTGSLNSAGDGTAVSSGGGSGGGGGGGTSSSPLAAVVREQGNTVTDLGQTVS
GLGGTVSNVVKPLVGDASAQGVNGVVGHTGGVVSAVGAAVANGVGQIGKVDNPLGVTAAG
LGGAVDQAGNAVSSAGAAVTGLGQNPATSALSPVTNVAGQAVDQAGQVVSRVGQGLDTQL
STGPVNPLLGGASKVVETVVNTGAGATQTVGKATGLGPVADRVVDPVAKAVGQAGEQLAG
SNQPVAREVGEILGNTSRTLGHTGDLVNAPASGAPIGSVEQVGRAINTVIVPITAGVTQV
AAHVNDATGVGTPVGNLLVTTGGAVQQLGVGVQGNGSQPVVNSLGEVVTQTGGLVANIGG
AVGGTTGSGGAGVLAPVVGAVSGLTGGGSGGAGSVLAPVVNTVGALTGGITATVGGGQVG
GGSSNPLTTTLTNTLGGLTGALNR