Protein Info for GFF4554 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Chromosome partition protein smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1172 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1162 (1161 residues), 1055.9 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1155 (1153 residues), 218.4 bits, see alignment E=1.7e-68 PF13476: AAA_23" amino acids 5 to 222 (218 residues), 61.4 bits, see alignment E=3.9e-20 PF06470: SMC_hinge" amino acids 524 to 623 (100 residues), 27.6 bits, see alignment E=6.6e-10

Best Hits

Swiss-Prot: 77% identical to SMC_DELAS: Chromosome partition protein Smc (smc) from Delftia acidovorans (strain DSM 14801 / SPH-1)

KEGG orthology group: K03529, chromosome segregation protein (inferred from 78% identity to adk:Alide2_2444)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1172 amino acids)

>GFF4554 Chromosome partition protein smc (Hydrogenophaga sp. GW460-11-11-14-LB1)
VRLNSIKLSGFKSFAEPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES
MQDVIFNGTTTRKQASRSSVELVFDNSDHRAGGQWGQFGEIAVKRVLTRDGTSSYYINNQ
PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESKPEELRLFLEEAAGVSKYKERRRET
ANRLADTRENLTRVEDILRELNANLDKLEKQAEVAARYNHLQSSATLKQQQLWFLKRAEA
ESDQVKVKTDAAQAVNDLESRTADLRRVESELETIRQAHYAAGDQVNQAQGKLYEASAEV
GKLEAEIRFVVEGRQRVEQRLAQLKEQLGTWATRSQDAAVELEQLAESMVQAEDQSVVLA
AQGEEQSGALPALEDSLRQAQARANEQRASVTQVQQQIQVLAAEQRNVEEQSRALNQRRE
RLVADRNALAAPDEARLLSAQTQLASAQETAELNDAVLHELQDSVPQLDEARRAAQQAVN
QESAKQADLSARMEALKALQDKVKTDGKLKPWLAKHGLESLQGLWSRIHIETGWENALEA
ALRERLSALEVSRLDMVRAFGNDAPPAKLAFYSPPPGAAAASSATGLKPLVQWLRLNDAG
QQALLAEWLHGCLTASSLEEALAQRAQLQPGEVIFVASGHAVTAHSVSFYAPDSEQAGLL
ARAQEIENIDKQLKAQVLIAEQARSALIRAEAAYTDASQRLVSARRDAAESRSRAHELQV
EALRLTQLAEQTRARSEQIGADLAEVDAQLEELQERRVTAEARFEELDMQLADSQERHAQ
FDDKVIEAERALNQAREQQRSLERTAQEAVFALRSLQARQSELQRSMETAASQEKSLADE
QQRASEELGRLNDAAAQAGLQNALAMKMEREQALGALRSQYDELTAKLRASDERRLQLER
ELEPLRNRITDFQLKEQAARLGVEQYSQLLEEAQADLAAVAQSVTEGNVRLSGLQSEIDR
LHREIQSLGAVNLAALDELTAARERKTFLDAQTADLVEAMNTLEDAIKKIDNETRELLGS
TFDTVNGHFGRMFPELFGGGNAKLMMTGEEILDAGVQVMAQPPGKKNQTIHLLSGGEKAL
TAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVTAMSKETQFLFISHNKIAMEM
AEQLIGVTMQEQGVSRIVAVDMESAAGMLEPT