Protein Info for GFF4542 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG002337: predicted inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details TIGR03368: cellulose synthase operon protein YhjU" amino acids 3 to 509 (507 residues), 452.4 bits, see alignment E=9.2e-140 PF11658: CBP_BcsG" amino acids 4 to 508 (505 residues), 473.1 bits, see alignment E=5.3e-146

Best Hits

KEGG orthology group: None (inferred from 39% identity to reu:Reut_B3520)

Predicted SEED Role

"FIG002337: predicted inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (526 amino acids)

>GFF4542 FIG002337: predicted inner membrane protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MMAWHLYFASKLLLGADEHLQLQVWLNFPLALLVYWPLMRRPWRLLRALLAWPAALALLT
HEAGVGLSGRLLQQLGQLSGFSSSYAMELGLRLLEVNALPALVVLLLACFWLNRWLRLEV
LLSLALLSLPLAGILQHAVEIGSSRVEARTTAPDARALDPQTKVQDFWQGERQRSRPFAP
GRQPPFDVVLLHVCSLSWDDLDAVGLGGRQLFDRFDLVFDQFNSVTSYSGPAMLRLMRAN
CGQTPHDQLYKPASEQCGLLHQLRLAGYQVQAYLNHDGQFDGFARALQAETPARILTPVT
SPGTPVALRAFDGTPIAGDHATLAAWQTGLSAAAPPQALYYNTVTLHDGNRVPGASALGM
MDSYRQRLDTLLRDMDRFIGDIERSRRPTLVVLLPEHGAALRKGAQHIAGLRDTPWPEIT
RVPVALKLIGMNAQRPPDLERPVRVSGPTSYLSFTALLADLLAKSDPWEVLRTAPHDVPG
VDFVSDNGETLVTRDDQALWLRTASSGWQRLARPDTHATQADRGAP