Protein Info for GFF4530 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 12 to 19 (8 residues), see Phobius details amino acids 36 to 38 (3 residues), see Phobius details transmembrane" amino acids 20 to 35 (16 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details PF04290: DctQ" amino acids 30 to 161 (132 residues), 69.9 bits, see alignment E=1e-23

Best Hits

KEGG orthology group: None (inferred from 63% identity to mlo:mll5171)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>GFF4530 hypothetical protein (Xanthobacter sp. DMC5)
MKALLSFSRSIDALNVFVGRVACWAIFVAILVSAANAVVRKMFGVSSNAWLELQWYLFGA
VFMLCAPWTLQLNEHIRIDIVASRLSRRVTNIIEIVCIVLFLMVFSTLMVWLSVPFVFDS
LKSGETSTNAGGLILWPAKALILIGFALLLLQGVSELIKRIAIMRGDLAEAAGADLHEAE
AERILHELAKVDPRISEGGMRP