Protein Info for GFF4530 in Pseudomonas sp. DMC3

Annotation: Cysteine/O-acetylserine efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 44 to 66 (23 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 141 to 170 (30 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details PF01810: LysE" amino acids 17 to 192 (176 residues), 64.5 bits, see alignment E=4.7e-22

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_3913)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (204 amino acids)

>GFF4530 Cysteine/O-acetylserine efflux protein (Pseudomonas sp. DMC3)
MNLSLDLLLGFALFALVTSITPGPNNTMLLASGVNFGFNRTIPHMLGISCGFFLLVVAVG
FGLGAVFQAYPVLYTVLRYVGAAYLLYLAWKIAHSGPVGDSAHGEAKPISYLGAAAFQWV
NPKAWIMAIGAISTYTPMQGYFYNVVIIAAVFAIINLPSVGLWAACGTLLRNVLKDPRWL
RVFNWGMAALLVISLYPLLLESFH