Protein Info for PS417_23085 in Pseudomonas simiae WCS417

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 17 to 48 (32 residues), see Phobius details amino acids 55 to 72 (18 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 139 to 164 (26 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 203 to 221 (19 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details PF01925: TauE" amino acids 20 to 248 (229 residues), 113.2 bits, see alignment E=8.3e-37

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 96% identity to pfs:PFLU5046)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBN8 at UniProt or InterPro

Protein Sequence (255 amino acids)

>PS417_23085 permease (Pseudomonas simiae WCS417)
MSPVELMSQWSFGGADWLVIGVGVVVAYIVFGIAGFGTALVAGPILILFMPLSKIIPLLV
LLDFVAAFGNLLQSRRDVNKPELLRLLPCMAIGCTLGVVFLLNLHSDLLLLLMGLFISAY
AIYSLAVKARPTQLASAWSIPMGTVGGLFGALFGSGGFLYAIYLNSRLPKDAARATQSAL
ISCSTVVRLSLFLVAGVYADLPLLMLALCLLPAMALGLWCGRRLTMRMSREAFVRLVTWL
VLASGIALIGRYLST