Protein Info for GFF4510 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 transmembrane" amino acids 37 to 62 (26 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 105 to 131 (27 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 294 to 318 (25 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 359 to 377 (19 residues), see Phobius details amino acids 384 to 408 (25 residues), see Phobius details amino acids 420 to 445 (26 residues), see Phobius details amino acids 451 to 470 (20 residues), see Phobius details PF07690: MFS_1" amino acids 46 to 436 (391 residues), 167.6 bits, see alignment E=2e-53

Best Hits

KEGG orthology group: None (inferred from 49% identity to cwo:Cwoe_4580)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>GFF4510 hypothetical protein (Variovorax sp. SCN45)
MSSASLDPCNPHRGGNDDEGPAATQGTDPLHWPARMWIALLIFSGVILLDGLDISMIVVA
IPQIQQEFGMGAATAQWLVSAYILAFGGFLLLGGRCADLFGRRRVLVAGLAVFALVSVGG
AFATDAGLLIVSRFVKGMAAGFTGPAAMSLLTTTFAEGPARNKAFGIFNLFEASGYSSGL
LIGGLLAALDWRYIFVLPIPVAVLLLLAALRYLPPDAPRAERTRLDVGGAVTLLAGMLLL
VFTVVSAEEAGWASLRTVGGFVVAVALLAGFVAIERSVKEPLVRLGIFRNRGLVAANISA
ALLYGGAAGFQFLIALYLQNIQGWKPWQMALVLLPAGLMVVVVGPKIGALISRFGVRRVL
LAGLAAFVPCYLLMFGIGPEPDLWGVLLPASVLWGVGFALSISALMVAGTSGVADEEQGL
AAGLLNSSLQVGGACGLAVLTAAIGPGTELGMLYAGVGVMLGFAVLALVVQVRSRAARR