Protein Info for GFF451 in Xanthobacter sp. DMC5

Annotation: Beta-barrel assembly-enhancing protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 701 PF13432: TPR_16" amino acids 97 to 140 (44 residues), 18.4 bits, see alignment 1.8e-06 amino acids 136 to 184 (49 residues), 27.1 bits, see alignment 3.5e-09 amino acids 192 to 255 (64 residues), 35.5 bits, see alignment E=8.5e-12 amino acids 261 to 322 (62 residues), 19.3 bits, see alignment 9.3e-07 amino acids 294 to 356 (63 residues), 29.5 bits, see alignment E=6.1e-10 PF07719: TPR_2" amino acids 119 to 151 (33 residues), 25.6 bits, see alignment (E = 6.8e-09) PF00515: TPR_1" amino acids 119 to 150 (32 residues), 28.5 bits, see alignment (E = 7.2e-10) PF13181: TPR_8" amino acids 122 to 151 (30 residues), 14.2 bits, see alignment (E = 3.1e-05) amino acids 153 to 180 (28 residues), 16.1 bits, see alignment (E = 7.4e-06) amino acids 188 to 216 (29 residues), 15.7 bits, see alignment (E = 1e-05) amino acids 291 to 322 (32 residues), 15.2 bits, see alignment (E = 1.5e-05) amino acids 324 to 355 (32 residues), 12.9 bits, see alignment (E = 8.1e-05) amino acids 395 to 423 (29 residues), 16.2 bits, see alignment (E = 7e-06) PF13374: TPR_10" amino acids 123 to 149 (27 residues), 17 bits, see alignment (E = 3.7e-06) amino acids 323 to 351 (29 residues), 16 bits, see alignment (E = 7.3e-06) PF13414: TPR_11" amino acids 128 to 167 (40 residues), 43.4 bits, see alignment 1.6e-14 PF14559: TPR_19" amino acids 164 to 227 (64 residues), 30 bits, see alignment E=3.9e-10 amino acids 266 to 327 (62 residues), 26.8 bits, see alignment 4e-09 PF13176: TPR_7" amino acids 291 to 325 (35 residues), 15.3 bits, see alignment (E = 1.3e-05) PF13469: Sulfotransfer_3" amino acids 463 to 653 (191 residues), 151.9 bits, see alignment E=2.4e-47 PF00685: Sulfotransfer_1" amino acids 463 to 649 (187 residues), 29.8 bits, see alignment E=3.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (701 amino acids)

>GFF451 Beta-barrel assembly-enhancing protease (Xanthobacter sp. DMC5)
MAEGMGADRGGPLPTLERAWELYRAGDLGGAEAVARAIVQRAVLGEQAATAEAAHLVGVI
LAQTGRTAEAVTFMAWAAGADPGRASYHSNLCEMRRQTGDRAGAVAAGRAAVAADPAYAA
GHNNLGIALFETGALEEALACYGRAIALRPAFAEAHNNLGNALRAKGLPNEAIAAFRAAL
AQRGHYPEAWHNLGNVLREQGDIREADAAFHTAIAQRRDYVEAYNSLALSLFAQERSEEA
FAVLALAIAAAPDRPEPAFYLAQGLLNERKAEGARSACQRALRANPHHVPTLVLLARILR
DLERGDEAMDAARRALSLAPDDLDALNVLGLLLMETGDLRGACALFERALANDPASVNSR
INLVAARKVRPDEDMVAALEGALAAETGETERIPLHYALGKAYDDLGRHAEAMEQFIAGA
RLKRAQLTYDEPASLATFERIRAIFTPAFMAERAGMGHAQARPIFIVGMPRSGSTLVEQI
LASHPAIQGGGEMDLFHRAVNRIDQAFGGMVHYPELMHLIERPEMAEISSAYLDALPARA
PGKRLVADKMLNNYFYLGLIHILFPRAVIIHCRRDPVDTAISCFSKLFRDDLPYSYDFGE
LARHHHAYAGLMAHWDQVLPEGTILPMDYEAVVADIEGAARRLIAACGEEWDPACLKFHE
TERPVRTASITQVREPLYATSVGRWRRYGHAIQPLLDALGR