Protein Info for GFF4490 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Benzoate transport, extracellular ligand-binding receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF04348: LppC" amino acids 31 to 200 (170 residues), 30.4 bits, see alignment E=4e-11 PF13433: Peripla_BP_5" amino acids 35 to 359 (325 residues), 86.6 bits, see alignment E=3.7e-28 PF13458: Peripla_BP_6" amino acids 35 to 373 (339 residues), 246.1 bits, see alignment E=1.7e-76 PF01094: ANF_receptor" amino acids 56 to 340 (285 residues), 48.5 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: None (inferred from 84% identity to pol:Bpro_2984)

Predicted SEED Role

"Benzoate transport, extracellular ligand-binding receptor" in subsystem Benzoate transport and degradation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (395 amino acids)

>GFF4490 Benzoate transport, extracellular ligand-binding receptor (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTTRRIVLTRSAAVIGAASTGLLLPQIVRAQSDKVRVGFMLPYTGTFAQLGVAIENGFRM
ALNEQGGKLGGREVEYFKVDDESNPAKGIENATRLVQRDKVDVLVGTVHSGVQMGIHKVA
RDTGVLNLIPNAGVHIATRAQCAPNVFRTSFTNSQPTLALGKAMVANGHKKAVWITWNYA
AGDEAFEGFEQSYTAAGGTIMKKLGLPFPNVEFQALLTEIASLKPDAVACFFAGGGAAKF
MTDFAAAGLNKSIQLYGSGFLTEGTLEAAGPAANGVLTTMHYGDSLNTPRDKQFRLEYAK
AFRLQPDVYAVQGYDTGLLLVKGANAVKGDLNNKKALYAAMEGATIDSPRGKWTMSKAHN
PIQDIYMRKVENKENKVIGIAQKAVADPATGCRMG