Protein Info for PS417_22845 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 880 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 238 to 261 (24 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details amino acids 292 to 313 (22 residues), see Phobius details amino acids 318 to 336 (19 residues), see Phobius details amino acids 350 to 374 (25 residues), see Phobius details amino acids 394 to 413 (20 residues), see Phobius details amino acids 422 to 442 (21 residues), see Phobius details amino acids 448 to 466 (19 residues), see Phobius details amino acids 478 to 499 (22 residues), see Phobius details amino acids 522 to 541 (20 residues), see Phobius details PF09924: LPG_synthase_C" amino acids 566 to 852 (287 residues), 318.9 bits, see alignment E=1.5e-99

Best Hits

KEGG orthology group: K14205, phosphatidylglycerol lysyltransferase [EC: 2.3.2.3] (inferred from 98% identity to pfs:PFLU4997)

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.2.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UR57 at UniProt or InterPro

Protein Sequence (880 amino acids)

>PS417_22845 membrane protein (Pseudomonas simiae WCS417)
MRANSSEPKDTVTAEQPITPTRLRWLDLVSKYRQPIGLAVTLLLFAIALIACRHLLLELD
LYALHDSILEVPKPALLGAFAAAVAGFIILLGYEFSGARYAGVNLPAKTLALGGFTAFAI
GNAIGLSMLSGGSVRYRLYARHGIGASEVARMTVFASLALGTALPPLAALATLSNLPAAS
TYLHLPQAVLGGIAGAVLLLSAALCIGIYRRRLPEQPYPDNLLVKAGRRTLRLPGRRLTF
LQLIITALDVAAAATVLYMLLPEAPPFGPFLLVYLLALAAGVLSHVPGGVGVFEAILLAA
FADKLGAAPLAAALLLYRMIYVVLPLLIACVFLLVNEAQRLFQTQQSLRVASGLAAPVLA
VLVFLSGVVLLFSGATPEIDSRLENIGFLIPHRLIDASHFGASLIGVLCLLLAQGLRRRL
SAAWMLTMVLLLVGALLSLLKGFDWEEASLMTMTAILLAIFRRSFYRASRLTELPFSPLY
LVASVCVLGASIWLLLFAYQDVPYSHQLWWQFTLDANAPRGLRSLLGAAVVLVIVSLTWL
LRTARPVIHLPTPDELERASKILMASSQPDGGLALTGDKALLFHPNDEAFLMYARRGRSL
VALYDPIGPTQQRAEMIWQFRDLCDIHHARPVFYQVRAENLPYYMDIGLTAIKLGEEARV
DLKRFDLEAKGKEMKDLRYTWNRGSRDGLSLEICEPGTAPMDELKVISDAWLTGKNVREK
GFSLGRFSDDYLKHFRIAIIRFEGRPVAFANLLETYNHDLASLDLMRAHPDAPKLTMEFM
MVGLIQHYKSHGYARFSLGMVPLSGLQPRRGAPLTQRLGSMVFRRGEQLYNFQGLRRFKD
KFQPDWEPRYMAVPAGLDPLVALADTAALIAGGLTGLVKR